MmuEX0022228 @ mm10
Exon Skipping
Gene
ENSMUSG00000025534 | Gusb
Description
glucuronidase, beta [Source:MGI Symbol;Acc:MGI:95872]
Coordinates
chr5:129993418-129997926:-
Coord C1 exon
chr5:129997780-129997926
Coord A exon
chr5:129995447-129995531
Coord C2 exon
chr5:129993418-129993594
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCTTTCATGGACAGGAC
3' ss Score
8.68
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
TCAGAGTTTTGGCAACGAGTCACTTCGGCACCACCTAGAGGTGATGGAGGAGCTGGTTCGCCGGGACAAAAATCACCCTGCGGTTGTGATGTGGTCTGTGGCCAATGAGCCTTCCTCTGCTCTGAAACCCGCCGCATATTACTTTAA
Seq A exon
GACGCTGATCACCCACACCAAAGCCCTGGACCTCACCCGTCCCGTGACCTTTGTGAGCAACGCCAAATATGATGCAGACCTGGGG
Seq C2 exon
GCCCCGTACGTGGATGTTATCTGTGTAAACAGCTACTTTTCTTGGTATCATGACTATGGGCATTTGGAGGTGATTCAGCCACAGCTGAATAGCCAGTTTGAGAACTGGTATAAGACGCATCAGAAGCCGATTATCCAGAGCGAGTATGGAGCAGACGCAATCCCAGGGATCCACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025534_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
A:
PF0283612=Glyco_hydro_2_C=FE(9.2=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAAACCCGCCGCATATT
R:
ACTCGCTCTGGATAATCGGCT
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types