GgaEX1027896 @ galGal3
Exon Skipping
Gene
ENSGALG00000002542 | GUSB
Description
NA
Coordinates
chr19:4889533-4892375:-
Coord C1 exon
chr19:4892229-4892375
Coord A exon
chr19:4891256-4891340
Coord C2 exon
chr19:4889533-4889709
Length
85 bp
Sequences
Splice sites
3' ss Seq
GCTTTATCGTTTACAAACAGGAC
3' ss Score
7.58
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
TGAGAGCTTTGGGAACAAATCTCTACAGCATCATCTCGTTGTGATGGAGGAACTGATCCGCAGGGATAAGAACAGGCCCTCAGTTGTGATGTGGTCAGTAGCCAATGAGCCGGCATCAGAGCTGCCCCCAGCAGCTTACTACTTCAA
Seq A exon
GACACTGATAGCTCACACTAAAGCTCTGGATCCCTCCAGACCTGTAACGTTTGTGTCTGATACTAATTACGCTGTTGATCATGGT
Seq C2 exon
GCTCCTTATGTGGATGTAATCTGTGTGAACAGCTACTTCTCCTGGTACCACGACCCAGGCCATCTGGAAGTTATTCCACTGCAACTTACAGCACAGTTTGAGAACTGGTATAAAACCTACCAGAAACCCATTATCCAGAGTGAATATGGAGCTGACTCGATTCCCGGACTTCACAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002542-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
A:
PF0283612=Glyco_hydro_2_C=FE(9.2=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(19.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCAGTTGTGATGTGGTC
R:
TGTGCTGTAAGTTGCAGTGGA
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]