RnoEX0040718 @ rn6
Exon Skipping
Gene
ENSRNOG00000000913 | Gusb
Description
glucuronidase, beta [Source:RGD Symbol;Acc:2772]
Coordinates
chr12:30207355-30212377:+
Coord C1 exon
chr12:30207355-30207501
Coord A exon
chr12:30210417-30210501
Coord C2 exon
chr12:30212201-30212377
Length
85 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCTTCCGTGGATAGGAC
3' ss Score
9.56
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
CCAGAGTTTTGGCAACGTGTCTCTTCGGCACCACCTAGAGGTGATGGACGAGCTGGTGCGCAGGGACAAAAATCACCCTGCGGTCGTGATGTGGTCTGTGGCCAATGAGCCTGTCTCTTCTCTGAAACCTGCCGGATATTACTTCAA
Seq A exon
GACGCTGATCGCCCACACCAAAGCCCTGGACCCCACCCGTCCTGTGACCTTTGTGAGCAATACCAGATATGACGCAGACCTGGGG
Seq C2 exon
GCCCCGTACGTGGACGTGATTTGTGTGAACAGTTACTTATCCTGGTATCATGACTACGGGCATCTGGAGGTGATTCAGCTGCAGCTGACTAGCCAGTTTGAGAACTGGTATAAGATGTACCAGAAGCCAATTATCCAGAGCGAGTATGGAGCAGACGCCGTCTCGGGGCTTCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000913-'9-12,'9-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0283612=Glyco_hydro_2_C=FE(16.2=100)
A:
PF0283612=Glyco_hydro_2_C=FE(9.2=100)
C2:
PF0283612=Glyco_hydro_2_C=FE(19.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGCAGGGACAAAAATCAC
R:
CTGCAGCTGAATCACCTCCAG
Band lengths:
176-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]