DreALTA0004267-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000079388 | agrn
Description
agrin [Source:ZFIN;Acc:ZDB-GENE-030131-1033]
Coordinates
chr23:23849810-23868181:+
Coord C1 exon
chr23:23849810-23850031
Coord A exon
NA
Coord C2 exon
chr23:23867984-23868181
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
GTCACTCTTCTCTTCAGCAGATG
3' ss Score
7.1
Exon sequences
Seq C1 exon
ATCTTAACCTGGAGAGCCCCTGCCTGAAGAAGACCTGCGAGTTTGGAGCCGTGTGCGTGGTGAAGAACAGCGAAGCAGTGTGTGAATGCTCAGACGCCTGTCCGCAGGACCAAGACCCTGTTTGCGGCAGCGATGGGCACACGTACAGCAGCTCATGTCAAATGAAGGCCATGGGATGCGCTCTTCAGAAACAGATACAGATGCAACACAAAGGACCATGTG
Seq A exon
NA
Seq C2 exon
ATGAGTCCTGCACCAACTGCTCGTTTGGCGCGATCTGTGATGCCCAGACTGGCCGGTGCGTGTGCCCTAAAGGCTGTTTGGAAACACGGCAGCCCGTATGCGGCAGCGACGGCACCACGTATGACAACGAGTGCAAGCTCAACGTCCAAGCCTGCACTAAACAGCTGGATCTCAAGGTGGTGGCCCATGGAGAATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079388-15-19,15-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=WD(100=54.7)
A:
NA
C2:
PF0764810=Kazal_2=WD(100=60.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGCGCTCTTCAGAAACA
R:
CAGTCTGGGCATCACAGATCG
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]