DreEX0012156 @ danRer10
Exon Skipping
Gene
ENSDARG00000079388 | agrn
Description
agrin [Source:ZFIN;Acc:ZDB-GENE-030131-1033]
Coordinates
chr23:23831151-23925553:+
Coord C1 exon
chr23:23831151-23831357
Coord A exon
chr23:23917946-23918272
Coord C2 exon
chr23:23925426-23925553
Length
327 bp
Sequences
Splice sites
3' ss Seq
CCATTCCTGCTTTCTCCCAGAAT
3' ss Score
8.08
5' ss Seq
TTGGTAATG
5' ss Score
4.83
Exon sequences
Seq C1 exon
GGGGCTGCCCGAATGGTTGTAAGTTCAACGCCATATGTTTGCTGGATAATGGAGAGTTTCGGTGCTCCTGCGATCCCATACAATGCGACGGCACGTACAAGCCCCTGTGCGGAAAGGATGGCAAGACATACCCCAACGACTGCGAGAGGAAACTGCAGGAATGCCGGACCCAAAAAGACATCCCTGTCAAACAACAAGGGCCCTGTG
Seq A exon
AATCCATTGAGCTGACGGCCAAACCCACCCCCTTCCCAACCACCCACCGCACCACCCCTCCCACCGCTCACGTCAAGGTCACCAAACAGCGACATGGCCACCGCACCACCACTCCGGACAGCTATGTGGTGGAGGCAATGCCTCCACCGAGGTTGGATGGAGCGCGAAAGTTTTCCAGCCCTTTCACCACCCACCGTCCCACTACACCCTACAAACCACTCCGCACCTCATCCCCACCTCTGGACTTTGACGAGTCGGGCAGTGGAGAGCCCAGTGGGGATGATGAGATGGTGAGCGGAATGGAGGAGAGCGGAGAAGAGCCACTTG
Seq C2 exon
CCACCATGCGTTTCAGCGGCTTCCTGCACCTGGATAAGGTTGAGGGTCAGGAGGTCTTCTACACGCCTGAGATGGAGGACCCCAAATCGGAACTGTTTGGTGAAACGGCCCGAAGCATCGAGAGCGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079388_MULTIEX3-11/13=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.973 C2=0.435
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=WD(100=92.9)
A:
NO
C2:
PF0139015=SEA=PU(38.2=97.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTGCCCGAATGGTTGTA
R:
AGCGCTCTCGATGCTTCG
Band lengths:
334-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]