MmuEX0004302 @ mm9
Exon Skipping
Gene
ENSMUSG00000041936 | Agrn
Description
agrin [Source:MGI Symbol;Acc:MGI:87961]
Coordinates
chr4:155547652-155548391:-
Coord C1 exon
chr4:155548286-155548391
Coord A exon
chr4:155547894-155548199
Coord C2 exon
chr4:155547652-155547789
Length
306 bp
Sequences
Splice sites
3' ss Seq
TAACATCCGTCTTTTTGCAGAGA
3' ss Score
9.31
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GTCTGTGGATCAGATGGTGTCACATACGGCAATGAATGCCAGCTGAAGACCATTGCCTGCCGCCAGCGTCTGGACATCTCCATTCAGAGTCTTGGTCCATGCCGGG
Seq A exon
AGAGTGTTGCTCCTGGGGTTTCCCCTACATCTGCATCTATGACCACCCCAAGGCATATCCTGAGCAGGACACTGGCGTCTCCCCACAGCAGCCTTCCTCTGTCTCCCAGCACTACTGCCCATGATTGGCCCACCCCATTACCCACATCACCTCAGACCGTAGTCGGCACCCCCAGGAGCACTGCAGCCACACCCTCTGATGTGGCCAGTCTTGCTACAGCGATCTTCAGGGAATCTGGCAGCACCAACGGCAGTGGCGATGAGGAGCTCAGTGGCGATGAGGAGGCCAGTGGGGGCGGGTCTGGGG
Seq C2 exon
GACTTGAGCCCCCGGTGGGCAGCGTTGTGGTGACCCACGGGCCACCCATCGAGAGGGCTTCCTGTTACAACTCACCTTTGGGCTGCTGCTCAGATGGCAAGACACCCTCACTGGACTCAGAAGGCTCCAACTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041936-'32-36,'32-32,34-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.990 C2=0.559
Domain overlap (PFAM):
C1:
PF0764810=Kazal_2=PD(78.6=91.7)
A:
NO
C2:
PF0139015=SEA=PU(0.9=2.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGATCAGATGGTGTCACA
R:
TGGACAGTTGGAGCCTTCTGA
Band lengths:
241-547
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: