GgaEX1007044 @ galGal4
Exon Skipping
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2723397-2724252:-
Coord C1 exon
chr21:2724147-2724252
Coord A exon
chr21:2723642-2724025
Coord C2 exon
chr21:2723397-2723531
Length
384 bp
Sequences
Splice sites
3' ss Seq
TCCCTTGCTGCTCCTTGTAGAGT
3' ss Score
8.44
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
Exon sequences
Seq C1 exon
GTGTGTGGCTCTGATGGTGTTACCTATGGGGACCAGTGCCAGCTGAAGACCATTGCGTGCCGGCAGGGACAGCTCATCACAGTGAAACACGTGGGGCAATGCCACG
Seq A exon
AGTCTATAACTCACACGAGCCATACGATGCCACCCACCCCTCTGCCCACCTTGCCCTTGGACAAGCTCATCGTACCCCCACCACTGCAGCTGACCACCCAGGCTCCAGAGCCCACTGAGCTGGCCACCACCTCCCTGCTGATGGAAGCCAGCCCCACTACAAGAAGTCACCCTACAACAAGGCGTGTCACAACGACCCGACCTGTCACCACACCATGGATGACCCATGGAGTGCTGAAGACCACCGTCCGCCCACTCTCCACCTCTCCAGTGGTCCTGGCCACCACTCAGCCTCCCTACGCTGAATCGGGCAGTGCAGAAGGCAGTGGGGACCAGGAGATGAGCATCAGTGGGGACCAGGAATCCAGTGGGGCAGGCTCTGCTG
Seq C2 exon
GGGAAGAGGAGGTGGAGGAAAGCCAGGTAACCCCAACTCCAGCCATTGAGAGGGCAACGTGCTACAACACCCCACTCGGGTGCTGCTCTGATGGCAAGACTGCAGCTGCTGATGCAGAAGGGAGCAACTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041-'39-37,'39-34,40-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.984 C2=0.603
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=PD(62.3=91.7)
A:
NO
C2:
PF0139015=SEA=PU(0.9=2.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTGGCTCTGATGGTGTT
R:
GACAGTTGCTCCCTTCTGCAT
Band lengths:
238-622
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]