RnoEX0008005 @ rn6
Exon Skipping
Gene
ENSRNOG00000020205 | Agrn
Description
agrin [Source:RGD Symbol;Acc:2067]
Coordinates
chr5:173598286-173603912:-
Coord C1 exon
chr5:173603706-173603912
Coord A exon
chr5:173599077-173599409
Coord C2 exon
chr5:173598286-173598413
Length
333 bp
Sequences
Splice sites
3' ss Seq
TAACATCCTTCTTTTTGCAGAGA
3' ss Score
9.76
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
ACCAGTGCCCGGAGACCTGCCAGTTTAACTCCGTATGCCTGTCCCGCCGTGGCCGTCCCCACTGTTCCTGCGATCGTGTCACCTGTGATGGGTCTTACAGGCCTGTGTGTGCCCAAGATGGGCACACATACAACAATGACTGTTGGCGCCAACAGGCTGAGTGTCGACAACAGCGGGCCATTCCTCCCAAGCACCAGGGCCCGTGTG
Seq A exon
AGAGTGTTACTCCTGGGGCTTCCCCAACATCTGCATCTATGACTACCCCAAGGCATATCCTGAGCAAGACGCTGCCATTTCCCCACAACAGCCTTCCTCTGTCTCCCGGCAGTACTACCCATGATTGGCCCACCCCATTACCCATATCACCTCACACCACAGTCAGCATCCCCAGAAGCACCGCGTGGCCTGTGCTGACCGTGCCCCCTACAGCAGCAGCCTCTGACGTAACCAGTCTCGCAACATCAATCTTCAGTGAATCCGGCAGCGCCAATGGGAGTGGCGACGAGGAACTGAGTGGAGATGAGGAGGCCAGTGGGGGCGGGTCTGGGG
Seq C2 exon
CTACCAAGGCATTCCAGGGCGTGCTGGAGCTTGAGGGGGTCGAGGGACAGGAACTGTTCTACACACCTGAGATGGCTGACCCCAAGTCAGAGTTGTTTGGGGAGACCGCAAGGAGCATTGAAAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020205_MULTIEX2-12/13=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.866 C2=0.163
Domain overlap (PFAM):
C1:
PF0005016=Kazal_1=PD(95.8=97.1)
A:
NO
C2:
PF0139015=SEA=FE(38.9=100)
Main Skipping Isoform:
ENSRNOT00000045678fB818
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGCCCGGAGACCTG
R:
CGTGCTTTCAATGCTCCTTGC
Band lengths:
334-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]