DreALTA0005329-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000068148 | arrdc1a
Description
arrestin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030925-15]
Coordinates
chr5:28920937-28922951:-
Coord C1 exon
chr5:28922769-28922951
Coord A exon
chr5:28921110-28921113
Coord C2 exon
chr5:28920937-28921109
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACTGTTGCTCTCATTTTCAGAAA
3' ss Score
11.1
Exon sequences
Seq C1 exon
GAACCTAGCTCATCCTCCGTAACCAAGAATTTCTCATACATGCTTGTGAAAAATGGGACAGTGGTGCTGAATGCGAAGACTGACATGCGGGGGTATATTGCAGGACAGATCATTAAAGTTTCCGCTGGGATTGAAAACAAATCTGACAAGACGACAGGTCATGTGGTTGCCAGTCTAATGCAG
Seq A exon
AAAG
Seq C2 exon
TCACCTATAATACCAAGAAGCCAACATATGACTTGCGGTCCGTAGCGGAGGTGGAAGGACCTGGAGTAAAGGGTGGAAATAAATCAGAATGGAATCAGCAGATCATTGTACCTGCTCTTCCTCACTCCTCCCTGAGCGATGGAAACCTCATCCAAATCTGCTATTACATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068148-8-7,8-6-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.305
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCATGTGGTTGCCAGTC
R:
CCACCCTTTACTCCAGGTCCT
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]