MmuALTA0002074-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24926323-24926727:-
Coord C1 exon
chr2:24926545-24926727
Coord A exon
chr2:24926446-24926448
Coord C2 exon
chr2:24926323-24926445
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
ACAGTCAAGTCTTTCCTCAGAAG
3' ss Score
1.61
Exon sequences
Seq C1 exon
CAACCCAATGTGGCCTCCACTACCAAGAAGTTCTCCTATAAGCTGGTGAAGACTGGCAATGTGGTTCTCACAGCTAGCACTGACCTTCGTGGCTATGTGGTGGGACAGGTGCTGCGGCTGCAGGCTGACATTGAGAACCAGTCAGGCAAGGACACCAGCCCTGTGGTGGCCAGCTTGCTACAG
Seq A exon
AAG
Seq C2 exon
GTATCCTATAAGGCCAAGCGCTGGATCTATGATGTGCGGACCATTGCAGAGGTGGAGGGTACAGGTGTCAAGGCCTGGAGGCGTGCTCAGTGGCAAGAACAGATCCTGGTGCCTGCCCTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972-17-13,17-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.0=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCTGACATTGAGAACCA
R:
CCGCACATCATAGATCCAGCG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types