HsaALTA0000691-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000197070 | ARRDC1
Description
arrestin domain containing 1 [Source:HGNC Symbol;Acc:28633]
Coordinates
chr9:140508484-140508766:+
Coord C1 exon
chr9:140508484-140508666
Coord A exon
chr9:140508751-140508754
Coord C2 exon
chr9:140508755-140508766
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
ACAGGCTGGTCCTTCCCCAGAAA
3' ss Score
6.11
Exon sequences
Seq C1 exon
CAACCCAACGTGGCCTCTGCCACCAAGAAGTTCTCCTACAAGCTGGTGAAGACGGGCAGCGTGGTCCTCACAGCCAGCACTGATCTCCGCGGCTATGTGGTGGGGCAGGCACTGCAGCTGCATGCCGACGTTGAGAACCAGTCAGGCAAGGACACCAGCCCTGTGGTGGCCAGTCTGCTGCAG
Seq A exon
AAAG
Seq C2 exon
TGTCCTATAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197070-12-16,12-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0275217=Arrestin_C=PU(35.2=72.1)
A:
NA
C2:
PF0275217=Arrestin_C=FE(46.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)