DreALTA0009202-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000042990 | cyp2p10
Description
cytochrome P450, family 2, subfamily P, polypeptide 10 [Source:ZFIN;Acc:ZDB-GENE-040120-1]
Coordinates
chr20:25692066-25692492:+
Coord C1 exon
chr20:25692066-25692242
Coord A exon
chr20:25692351-25692423
Coord C2 exon
chr20:25692424-25692492
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCTTGTTTATGTTGTTCAGCAT
3' ss Score
4.99
Exon sequences
Seq C1 exon
CTCTATAACATGTTCCCGTGGCTCATGCAATTGCTGCCTGGACCACACAAGAAACTTATTACTCTGTGGCAGAGGGTGACTGACTTTGTTCGAGAGAAGGTGAATGAACACAGAGCGGATTATGATCAATCAAGTCTTCGAGACTACATTGACTGCTTTCTAGCTGAGATGGAAAAG
Seq A exon
CATAAAGACGACACAGCTGCTGGTTTTGATGTGGAGAACTTGTGCATGTGTACTCTGGATCTGTTTGTAGCAG
Seq C2 exon
GAACTGAGACCACCTCCACCACTCTGTACTGGGGTCTTCTCTACATGATAAAATATCCTGAAATACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042990-11-12,11-11,11-10-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGGACCACACAAGAAAC
R:
GTACAGAGTGGTGGAGGTGGT
Band lengths:
172-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]