DreALTA0012088-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000055713 | fmnl1a
Description
formin-like 1a [Source:ZFIN;Acc:ZDB-GENE-120215-83]
Coordinates
chr3:37077395-37078860:+
Coord C1 exon
chr3:37077395-37077665
Coord A exon
NA
Coord C2 exon
chr3:37078627-37078860
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GCCCGATTCTGCTTCTCAAGCCC
3' ss Score
2.2
Exon sequences
Seq C1 exon
GAGAGCTTGCGGGAGTCCTGCACTCAGGTGAGCACGCTACAGCAGAGAGAACGAGAGCGAGAGATCCAGAGAGAAAGAGAACGAGAGCAGGAGCGTCAGTCACAGCCCTCACAGGTGGACAGAGAGAAGGGGAGTGAAAAAGAGTCCAAACTGGAGAAAAAACTCAAAGAACTGCAGGAGAAAGGCTTACTTCGACTGGAGCGCACAGTCTCTGGAAGCCTGGACATTGACGTCATTCCAGTCACCTTAGAGAAGATTGTAACTCAGACAG
Seq A exon
NA
Seq C2 exon
CCCCACCCAGTCCGGCTGCAGCACCACCTCCACCTCCTCCACCCCCTCCACTACCTGGCGCTGAAGCACCTCCTCCTCCTCCACCACCTCCTCCTCCTTCTGGAAGTGGAGGTGCTCCTCCCCCTCCCCCTCCGCCACCTCCCCCTGGTGGAGGTCCACCACCACCCCCGCCTCCACCGGGCTCTGGGCCTCCACCTCCTCCTGGAGCTCCTCCTGCCCCTGGAGCTGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055713-13-14,13-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(17.3=37.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAAGCCTGGACATTGACG
R:
TAGTGGAGGGGGTGGAGGAG
Band lengths:
113-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]