MmuALTA0007312-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103192950-103193735:+
Coord C1 exon
chr11:103192950-103193202
Coord A exon
chr11:103193448-103193450
Coord C2 exon
chr11:103193451-103193735
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CGGGCACCTCCCACCTTCAGCAG
3' ss Score
5.62
Exon sequences
Seq C1 exon
GAGCGCTTCAGCGAGTCGACCCCCATGGGCACTTCCAGACGAATCCCTGAACCTGAGAAAGTGCCTGTCCCTACCGTGGTGCGACCCTCGGCTCTAGAACTGAAGGTGGAGGAGCTTGAGGAAAAGGGGTTAATCCGCATCCTGCGGGGGCCGGGGGACGTCGTTTCCATCGAGATCCTTCCAGGCGCTGCGGCGACACCAAGCGGTGACGACGCACAAGCTCCGAGGGTGTCCACTGATTCCCCTAGCACAG
Seq A exon
CAG
Seq C2 exon
AGTCAATTCCCGAAGCAGCATCACCACCGCCTCCGCCACCTCCACCACCACCTCCACTACCTAACCTCCAGTCCCAGCAGGAAGCCCCTCCCTCCGCACCCCCGCTGGCCCCGCCCCTCCCAGGCTGCGCAGAGCCGCCACCTGCACCACCGTTGCCTGGAGACCTGCCTCCCCCACCTCCGCCACCCCCACTTGGTACTGATGGACCAGTGCCACCGCCACCGCCACCGCCTCCGGGAGGGCCCCCTGATATCCTTGGAGGACAAGGCCCAGATATCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805-31-33,31-32-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.918 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(3.0=5.9)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTCCACTGATTCCCCTA
R:
GCTGGGACTGGAGGTTAGGTA
Band lengths:
105-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types