Special

MmuALTA0007312-2/2 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103054264-103055049:+
Coord C1 exon
chr11:103054264-103054516
Coord A exon
chr11:103054762-103054764
Coord C2 exon
chr11:103054765-103055049
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CGGGCACCTCCCACCTTCAGCAG
3' ss Score
5.62
Exon sequences
Seq C1 exon
GAGCGCTTCAGCGAGTCGACCCCCATGGGCACTTCCAGACGAATCCCTGAACCTGAGAAAGTGCCTGTCCCTACCGTGGTGCGACCCTCGGCTCTAGAACTGAAGGTGGAGGAGCTTGAGGAAAAGGGGTTAATCCGCATCCTGCGGGGGCCGGGGGACGTCGTTTCCATCGAGATCCTTCCAGGCGCTGCGGCGACACCAAGCGGTGACGACGCACAAGCTCCGAGGGTGTCCACTGATTCCCCTAGCACAG
Seq A exon
CAG
Seq C2 exon
AGTCAATTCCCGAAGCAGCATCACCACCGCCTCCGCCACCTCCACCACCACCTCCACTACCTAACCTCCAGTCCCAGCAGGAAGCCCCTCCCTCCGCACCCCCGCTGGCCCCGCCCCTCCCAGGCTGCGCAGAGCCGCCACCTGCACCACCGTTGCCTGGAGACCTGCCTCCCCCACCTCCGCCACCCCCACTTGGTACTGATGGACCAGTGCCACCGCCACCGCCACCGCCTCCGGGAGGGCCCCCTGATATCCTTGGAGGACAAGGCCCAGATATCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805-19-17,19-16-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.918 A=NA C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0636711=Drf_FH3=PD(3.0=5.9),PF051307=FlgN=PD(7.1=7.1)

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000046296





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000102642
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr17:45241862-45241890 
LOW PSI
HsaALTA1050969-2/3
(FMNL1)
Human
(hg19)
chr17:43319227-43319228 
Rat
(rn6)
chr10:91276165-91276455 
HIGH PSI
RnoALTA0015602-3/4
(Fmnl1)
Cow
(bosTau6)
chr19:45514370-45514371 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr3:37618480-37618481 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GGGTGTCCACTGATTCCCCTA

				
R: 
GCTGGGACTGGAGGTTAGGTA

				
Band lengths: 
105-108

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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