HsaALTA1050969-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45241382-45241890:+
Coord C1 exon
chr17:45241382-45241634
Coord A exon
chr17:45241862-45241864
Coord C2 exon
chr17:45241865-45241890
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
CTCAGATCTCGCACCTGCAGCAG
3' ss Score
6.03
Exon sequences
Seq C1 exon
GAGCGCTTCAGCGAATCGACCGCCATGGGGCCCTCCAGGCGTCCCCCAGAGCCTGAGAAAGCGCCTCCCGCTGCCCCGACGCGGCCCTCGGCCCTGGAGCTGAAGGTGGAGGAGCTGGAGGAGAAGGGGTTAATCCGTATTCTGCGGGGGCCGGGGGATGCTGTCTCCATCGAGATCCTCCCCGTCGCTGTGGCAACTCCGAGCGGCGGTGATGCTCCGACTCCGGGGGTGCCGACCGGCTCCCCCAGCCCAG
Seq A exon
CAG
Seq C2 exon
AGCCGGCTCCCGGAGCAGCGCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922-39-44,39-43,39-42-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(4.6=8.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains