RnoALTA0015602-3/4 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91275689-91276455:+
Coord C1 exon
chr10:91275689-91275941
Coord A exon
chr10:91276165-91276241
Coord C2 exon
chr10:91276242-91276455
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
TGGGCACCTCCCACCTGCAGCAG
3' ss Score
6.8
Exon sequences
Seq C1 exon
GAGCGCTTCAGCGAGTCGACCCCCATGGTCACTTCCAGACGAATCCCTGAACCTGAGAAAGTGCCTGCTCCTACCGTGGTGCGACCCTCAGCTCTTGAGCTGAAGGTGGAAGAGCTTGAAGAAAAGGGGTTAATCCGTATCCTGCGGGGACCGGGGGATGTCGTCTCCATCGAGATCCTCCCCGGCGCTGCGGCGACACCAAGCGGTGACGACGCACCAGCTCCGAGGGTGTCCACTGATTCCCCTAGCACAG
Seq A exon
CAGAGTCAGTTCCCGAAGCAGCATCACCAACGCCTCCGCCACCTCCGCCACCTCCACCTCCACTACCTAACCTCCAG
Seq C2 exon
TCCCAGCAGGAAGCCCTTCCCTCTGCACCCCCGCTGGCCCCGCCCCTCCCAGGCTGCGCAGCGCCGCCACCTGCACCACCGTTGCCTGGAGACCTGCCTCCCCCACCTCCACCACCCCCACTTGGAACTGATGGACCGGTGCCACCGCCACCGCCACCACCTCCAGGAGGGCCCCCTGATATCCTTGGAGGACAAGACCCAGAGATAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207-18-23,18-22,18-21,18-20-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.859 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(19.2=44.7),PF051307=FlgN=PD(7.1=7.1)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGTCCACTGATTCCCCTA
R:
CACCGGTCCATCAGTTCCAAG
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]