DreALTA0014732-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39986578-39986938:+
Coord C1 exon
chr6:39986578-39986690
Coord A exon
chr6:39986773-39986878
Coord C2 exon
chr6:39986879-39986938
Length
106 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAC
5' ss Score
2.13
3' ss Seq
ACCTGCGTGTGTGTTTGCAGGAG
3' ss Score
10.25
Exon sequences
Seq C1 exon
ATGACGTGGAGCGCGCGTGTGATTCTCTATGGATGTGTATGATCACTGTACTCAGTCATGGCCTCAGGAGCGGTGGAGGAGTTGGAGATGTCCTGCGCAAACCGTCTAAAGAG
Seq A exon
GAGCGTCTGTTCGCCGCACGGGTGGTGTACGATCTCCTGTTCTTCTTCCTGGTGATCATCATTGTGTTGAATCTGATCTTCGGTGTGATCATTGACACATTTGCAG
Seq C2 exon
ATCTGAGAAGCGAGAAGCAGAGAAAAGAGGAGATCTTGAAGACCACATGCTTCATCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-60-71,60-70-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(15.9=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(12.4=51.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGCGTGTGATTCTCTATGG
R:
CACAGATGAAGCATGTGGTCT
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]