DreALTD0008796-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000015126 | gorasp2
Description
golgi reassembly stacking protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1659]
Coordinates
chr6:3704102-3706423:+
Coord C1 exon
chr6:3704102-3704126
Coord A exon
chr6:3704127-3704176
Coord C2 exon
chr6:3706220-3706423
Length
50 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
ATTTATATTTTTTTTCTAAGAAC
3' ss Score
5.76
Exon sequences
Seq C1 exon
GAGAATTCTCCTGGACACAGGGCAG
Seq A exon
GTCTTGAACCCTTTTTTGACTTCATTGTGTCTATCAACAACACCCGACTG
Seq C2 exon
AACAAGGACAATGACACGCTGAAAGACATACTGAAGGCTAGCGTTGAGAAGCCTGTGAAGATGCAGGTGTACAGCAGCAAAACCCTGGAGCTGCGGGAAGCCACTGTCACCCCGAGCAACATGTGGGGCGGTCAGGGTCTTCTGGGGGTCAGCATTCGCTTCTGCAGCTTTGAGGGAGCCAATGAGAACGTCTGGCATGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015126-3-3,4-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]