HsaALTD0002837-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000115806 | GORASP2
Description
golgi reassembly stacking protein 2 [Source:HGNC Symbol;Acc:HGNC:17500]
Coordinates
chr2:170948350-170949742:+
Coord C1 exon
chr2:170948350-170948380
Coord A exon
chr2:170948381-170948430
Coord C2 exon
chr2:170949539-170949742
Length
50 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
TGATTTCTATGTGTTCACAGAAT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GTACAAGAAAATTCCCCAGGACACAGAGCTG
Seq A exon
GTTTGGAGCCTTTCTTTGATTTTATTGTTTCTATTAATGGTTCAAGATTA
Seq C2 exon
AATAAAGACAATGACACTCTTAAGGATCTGCTGAAAGCAAACGTTGAAAAGCCTGTAAAGATGCTTATCTATAGCAGCAAAACATTGGAACTGCGAGAGACCTCAGTCACACCAAGTAACCTGTGGGGCGGCCAGGGCTTATTGGGAGTGAGCATTCGTTTCTGCAGCTTTGATGGGGCAAATGAAAATGTTTGGCATGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115806-7-12,8-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCCCCAGGACACAGAGCT
R:
TGGTGTGACTGAGGTCTCTCG
Band lengths:
136-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development