HsaALTD0002837-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000115806 | GORASP2
Description
golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:17500]
Coordinates
chr2:171804860-171806252:+
Coord C1 exon
chr2:171804860-171804890
Coord A exon
chr2:171804891-171804940
Coord C2 exon
chr2:171806049-171806252
Length
50 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
TGATTTCTATGTGTTCACAGAAT
3' ss Score
8.49
Exon sequences
Seq C1 exon
GTACAAGAAAATTCCCCAGGACACAGAGCTG
Seq A exon
GTTTGGAGCCTTTCTTTGATTTTATTGTTTCTATTAATGGTTCAAGATTA
Seq C2 exon
AATAAAGACAATGACACTCTTAAGGATCTGCTGAAAGCAAACGTTGAAAAGCCTGTAAAGATGCTTATCTATAGCAGCAAAACATTGGAACTGCGAGAGACCTCAGTCACACCAAGTAACCTGTGGGGCGGCCAGGGCTTATTGGGAGTGAGCATTCGTTTCTGCAGCTTTGATGGGGCAAATGAAAATGTTTGGCATGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115806-4-12,5-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.239 A=NA C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCCCCAGGACACAGAGCT
R:
TGGTGTGACTGAGGTCTCTCG
Band lengths:
136-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)