GgaALTD1010607-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009583 | GORASP2
Description
Golgi reassembly-stacking protein 2 [Source:RefSeq peptide;Acc:NP_001012612]
Coordinates
chr7:17674275-17675340:-
Coord C1 exon
chr7:17675264-17675340
Coord A exon
chr7:17675260-17675263
Coord C2 exon
chr7:17674275-17674478
Length
4 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTTTGTTTGATCGTTCACAGAAT
3' ss Score
8.61
Exon sequences
Seq C1 exon
GTCCAAGAAAACTCCCCAGGACACAGGGCTGGATTGGAGCCGTTCTTTGATTTTATTGTGTCTATTAACGGTTCGAG
Seq A exon
GTTG
Seq C2 exon
AATAAAGACAATGACACTCTCAAGGACCTGTTGAAAGCAAATGTTGAAAAACCTGTAAAAATGCTGGTGTACAGCAGCAAGACACTGGAACTGAGGGAAACATCCGTGACGCCCAGCAACATGTGGGGGGGGCAGGGCCTGCTGGGGGTGAGCATTCGTTTCTGTAGCTTCGATGGGGCCAATGAAAACGTGTGGCACGTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009583-1-3,2-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACTCCCCAGGACACAGG
R:
CAACAGGTCCTTGAGAGTGTCA
Band lengths:
104-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]