DreALTD0013773-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000017910 | pdss1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:ZFIN;Acc:ZDB-GENE-030131-4430]
Coordinates
chr24:5989159-5989438:-
Coord C1 exon
chr24:5989332-5989438
Coord A exon
chr24:5989325-5989331
Coord C2 exon
chr24:5989159-5989239
Length
7 bp
Sequences
Splice sites
5' ss Seq
TATGTACGT
5' ss Score
3.41
3' ss Seq
CTGCTTTATTTCAATCTTAGGTG
3' ss Score
8.88
Exon sequences
Seq C1 exon
GTGAGTTTATGCAGCTGGGCTCCAAAGAGAACGAAAACGAGCGATTCAAGCATTACCTCGAGAAAACCTTCAAGAAGACGGCCAGTCTGATTGCGAACAGCTGTAAA
Seq A exon
GCAGTAT
Seq C2 exon
GTGTCTATTCTGGTGAACTCTGACCCTGAGGTGCATGAGATCGCATATCAGTATGGACGAAACGTCGGAATTGCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017910-8-9,9-9,10-9-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(13.8=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAACGAGCGATTCAAGCA
R:
CCTCAGGGTCAGAGTTCACCA
Band lengths:
107-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]