HsaALTD0004655-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000148459 | PDSS1
Description
prenyl (decaprenyl) diphosphate synthase, subunit 1 [Source:HGNC Symbol;Acc:17759]
Coordinates
chr10:27012943-27024249:+
Coord C1 exon
chr10:27012943-27013052
Coord A exon
chr10:27013053-27013056
Coord C2 exon
chr10:27024169-27024249
Length
4 bp
Sequences
Splice sites
5' ss Seq
TATGTACGT
5' ss Score
3.41
3' ss Seq
GAATGCTCTTTCTGTTTCAGGTC
3' ss Score
12.13
Exon sequences
Seq C1 exon
GTGAATTTCTTCAGCTCGGGTCAAAAGAAAATGAGAATGAAAGATTTGCACACTACCTTGAGAAGACATTCAAGAAGACCGCCAGCCTGATAGCCAACAGTTGTAAAGCA
Seq A exon
GTAT
Seq C2 exon
GTCTCTGTTCTAGGATGTCCCGACCCAGTGGTGCATGAGATCGCCTATCAGTACGGAAAAAATGTAGGAATAGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148459-9-13,10-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(13.7=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(17.8=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCAAGAAGACCGCCAGC
R:
TAGGCGATCTCATGCACCACT
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)