GgaALTD0002946-2/2 @ galGal3
Alternative 5'ss
Gene
ENSGALG00000007559 | E1BZW8_CHICK
Description
NA
Coordinates
chr2:16009274-16016030:-
Coord C1 exon
chr2:16015921-16016030
Coord A exon
chr2:16015917-16015920
Coord C2 exon
chr2:16009274-16009354
Length
4 bp
Sequences
Splice sites
5' ss Seq
TATGTACGT
5' ss Score
3.41
3' ss Seq
CGTTTTGTTTTTCTTCTCAGGTT
3' ss Score
11.29
Exon sequences
Seq C1 exon
GTGAATTCCTCCAGTTGGGTTCCAAGGAAAACGAGAATGAGAGATTTGCTCACTACCTCGAGAAGACTTTTAAGAAGACTGCGAGTCTGATAGCAAACAGTTGTAAAGCA
Seq A exon
GTAT
Seq C2 exon
GTTTCAATTCTAGGCTGCCCCGATCCCAAAGTTCACGAGATCGCATACCAGTACGGAAAAAACGTTGGCATTGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007559-10-10,11-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0034812=polyprenyl_synt=FE(13.7=100),PF073076=HEPPP_synt_1=FE(27.1=100)
A:
NA
C2:
PF0034812=polyprenyl_synt=FE(9.9=100),PF073076=HEPPP_synt_1=PD(2.3=11.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCACTACCTCGAGAAGACT
R:
CTCGTGAACTTTGGGATCGGG
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]