DreALTD0016834-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000026137 | sfxn5b
Description
sideroflexin 5b [Source:ZFIN;Acc:ZDB-GENE-050706-107]
Coordinates
chr14:46338081-46340540:+
Coord C1 exon
chr14:46338081-46338171
Coord A exon
NA
Coord C2 exon
chr14:46340425-46340540
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTGTGT
5' ss Score
5.93
3' ss Seq
GTATCGATTATTATTTTCAGCCA
3' ss Score
3.38
Exon sequences
Seq C1 exon
GTGGGTCTGAATGTACTGATCCAGAAATCCAGCAAGTTTAACCCTGCCACCAGACTCTTCATACAGAGGTTTATCCCCTTCCCCGCTGTCG
Seq A exon
NA
Seq C2 exon
CCAGTGCAAACATCTGCAATGTGGCTCTAATGAGACACAATGAGCTGTCGGAGGGAATCGATGTTTTGGACAGCGATGGGAATGTGGTGGGATCCTCACGGATTGCTGCCAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026137-11-9,12-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(9.7=100)
A:
NA
C2:
PF0382012=Mtc=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGTTTATCCCCTTCCCCG
R:
CACATTCCCATCGCTGTCCAA
Band lengths:
113-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]