GgaALTD1020922-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000016094 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
Coordinates
chr4:89336272-89339166:+
Coord C1 exon
chr4:89336272-89336315
Coord A exon
chr4:89336316-89336338
Coord C2 exon
chr4:89339051-89339166
Length
23 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CGTGCTTTTCTCATCCTCAGCCA
3' ss Score
8.49
Exon sequences
Seq C1 exon
AGAGCGAACAAGTTTACCCCCGCCACTCGTCTCTTGATCCAGAG
Seq A exon
GTTTGTGCCATTCCCTGCTGTTG
Seq C2 exon
CCAGTGCCAATATCTGCAACGTTGTCCTGATGAGGCACACGGAGCTGGAAGAAGGAATTGATGTTTTGGACAATAATGGAAACATCGTCGGCTCTTCCAGAATTGCTGCAAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016094-20-27,21-27-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(9.7=100)
A:
NA
C2:
PF0382012=Mtc=FE(12.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTCGTCTCTTGATCCAG
R:
AGAGCCGACGATGTTTCCATT
Band lengths:
118-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]