MmuALTD1021167-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000033720 | Sfxn5
Description
sideroflexin 5 [Source:MGI Symbol;Acc:MGI:2137681]
Coordinates
chr6:85236840-85256433:-
Coord C1 exon
chr6:85256350-85256433
Coord A exon
chr6:85256343-85256349
Coord C2 exon
chr6:85236840-85236955
Length
7 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
CTCTGTATTCCTCTCTCCAGCCA
3' ss Score
8.15
Exon sequences
Seq C1 exon
GTGGGCCTTAATGTGCTGGTTCAGAAAGCAAACAAGTTCACTCCAGCTACTCGCCTTCTCGTGCAGAGATTTGTACCCTTCCCT
Seq A exon
GCAGTAG
Seq C2 exon
CCAGTGCCAATATCTGCAACGTGGTCCTGATGCGATATGGGGAGTTAGAGGAAGGAATTGATGTCCTGGATGCTGATGGCAACCTCGTGGGCTCCTCAAAGATTGCAGCCAGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033720-38-32,39-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(10.1=100)
A:
NA
C2:
PF0382012=Mtc=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCTTAATGTGCTGGTTCA
R:
ACCACGTTGCAGATATTGGCA
Band lengths:
107-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types