HsaALTD0005847-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000144040 | SFXN5
Description
sideroflexin 5 [Source:HGNC Symbol;Acc:16073]
Coordinates
chr2:73198699-73215477:-
Coord C1 exon
chr2:73215410-73215477
Coord A exon
chr2:73215387-73215409
Coord C2 exon
chr2:73198699-73198814
Length
23 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TGCATCCCCTCTCTCTGCAGCCA
3' ss Score
11.22
Exon sequences
Seq C1 exon
GTGGGCCTTAATGTCCTGGTTCAGAAAGCCAACAAGTTCACCCCAGCCACCCGCCTTCTCATCCAGAG
Seq A exon
GTTTGTGCCGTTCCCTGCTGTAG
Seq C2 exon
CCAGTGCCAATATCTGCAATGTGGTCCTGATGCGGTACGGGGAGCTGGAGGAAGGGATTGATGTCCTGGACAGCGATGGCAACCTCGTGGGCTCCTCCAAGATCGCAGCCCGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144040-35-40,36-40-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0382012=Mtc=FE(16.5=100)
A:
NA
C2:
PF0382012=Mtc=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAACAAGTTCACCCCAG
R:
CGCTGTCCAGGACATCAATCC
Band lengths:
118-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)