DreEX0000022 @ danRer10
Exon Skipping
Gene
ENSDARG00000075737 | A2ML1 (6 of 13)
Description
alpha-2-macroglobulin-like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr3:134292-135040:-
Coord C1 exon
chr3:134828-135040
Coord A exon
chr3:134598-134747
Coord C2 exon
chr3:134292-134417
Length
150 bp
Sequences
Splice sites
3' ss Seq
TCTTTCATTGTTTGTTGCAGGTT
3' ss Score
10.91
5' ss Seq
GCGGTAATT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GTCATGTCCAAGGGAGTGATCATTCTGCATGGGTTTAAAACTGTTCAAGCTCTGGCTTTTGATACCATCACCAGTGGCACAGTGTCATTTGATCTCTCCATTCTTGCCAATATGGCTCCGATGGTGCAGATTCTGGCCTTCTGTGTTCTGCCCAGCCAGACTGTAGTGGCTGGTAGTGCATCTTTTGACACTGAGAAGTGCTTCTCAAATCAG
Seq A exon
GTTTCTCTACAGTTCTCTCCTGCTTCTGCTGTTCCTGGAGAGGGAAGTGTTTTGACAGTCTCTGCTCAAGCAGGATCTCTGTGTGGCCTCAGTGCTATAGATCAGAGCGTCCTGATCCTGCAGTCAGGAGGACGTCTTACTGCAGAGGCG
Seq C2 exon
GTGTTTGGTTTACTCCCAGTGCAATCACTATATGATTATCCACCTGGTGTTGAAGATCAACAGGACTGCCTGCAAGTTCGACCCCGTCGAGCTGTTCCAACAGATCAGGCTTATAACACCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075737-'12-14,'12-13,13-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(47.0=100)
A:
PF077039=A2M_N_2=PD(26.2=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATCACCAGTGGCACAGT
R:
GTTGGAACAGCTCGACGGG
Band lengths:
252-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]