GgaEX6027220 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr27:1592724-1593537:+
Coord C1 exon
chr27:1592724-1592869
Coord A exon
chr27:1593047-1593196
Coord C2 exon
chr27:1593346-1593537
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTGTGTTTCCCCCAGGTG
3' ss Score
13.44
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GATTGAGAGGCTCCTTCTCCCTGGAGCTGCCCACCAGCCCTGAGCTGGCGCCCACAGCCACAGTGCTGGGCTACGCAGTGCTCCCCAATGGCGAGATGCTGGCTGGCAGCACCAACCTCAACGTGCTCAACTGCCTCCCCAACAAG
Seq A exon
GTGAAAATGGCCTTTTCCAAGGAGCGGGCGCTGCCTGGCTCAACACTGAGGATGGGGCTGGAGGCATCCCCAGGCTCCCTGTGTGCCATCCGTGCCGTGGATCGCAGTGTGCTGCTCCTGAAGCCCGAGGCTGAGCTCAGCATGGCAGAG
Seq C2 exon
ATCTACAAAGTGCTCCCCAATTTTGATTACCCTGGAAGCATTCGAGACCCACCGCCCTGTACCTGGTACCGTCGCCACTGGTACATCCCCAGAATTACCATGAGCGAGCCCATAGACCTGCGCCGTTCAAGGAGATTTATTTTACCACCTTACTGGGACAGTTTCCAGCTGAGCCCCTACACGTTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(32.2=100)
A:
PF077039=A2M_N_2=PD(26.2=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAGGCTCCTTCTCCCTG
R:
TGGGCTCGCTCATGGTAATTC
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]