GgaEX6027220 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NK40]
Coordinates
chr27:1687392-1688205:+
Coord C1 exon
chr27:1687392-1687537
Coord A exon
chr27:1687715-1687864
Coord C2 exon
chr27:1688014-1688205
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTGTGTTTCCCCCAGGTG
3' ss Score
13.44
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GATTGAGAGGCTCCTTCTCCCTGGAGCTGCCCACCAGCCCTGAGCTGGCGCCCACAGCCACAGTGCTGGGCTACGCAGTGCTCCCCAATGGCGAGATGCTGGCTGGCAGCACCAACCTCAACGTGCTCAACTGCCTCCCCAACAAG
Seq A exon
GTGAAAATGGCCTTTTCCAAGGAGCGGGCGCTGCCTGGCTCAACACTGAGGATGGGGCTGGAGGCATCCCCAGGCTCCCTGTGTGCCATCCGTGCCGTGGATCGCAGTGTGCTGCTCCTGAAGCCCGAGGCTGAGCTCAGCATGGCAGAG
Seq C2 exon
ATCTACAAAGTGCTCCCCAATTTTGATTACCCTGGAAGCATTCGAGACCCACCGCCCTGTACCTGGTACCGTCGCCACTGGTACATCCCCAGAATTACCATGAGCGAGCCCATAGACGTGCGCCGTTCAAGGAGATTTATTTTACCACCTTACTGGGACAGTTTCCAGCTGAGCCCCTACACGTTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000293-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(32.2=100)
A:
PF077039=A2M_N_2=PD(26.2=78.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAGGCTCCTTCTCCCTG
R:
TGGGCTCGCTCATGGTAATTC
Band lengths:
256-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]