DreEX0000094 @ danRer10
Exon Skipping
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61866501-61871019:+
Coord C1 exon
chr5:61866501-61866623
Coord A exon
chr5:61868911-61868986
Coord C2 exon
chr5:61870915-61871019
Length
76 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTCGCTCTGTTCAGAGC
3' ss Score
9.19
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
AAAGCGCAGAAGGGTCAGAGCCGGAATGTGGATCGTCTCAGGAAGAAGATGAACGAGCAGGAGTCTTGTTTGCTGTTAAACTCCCCCACCATCCCATTCCGCATCCACAACAAACACGGCAAG
Seq A exon
AGCTACCTGTTCCTGCTGTCCTCAGATTATGAGAGGTCGGAATGGAGGGAAAGCATTCAGAAACTGCAGAAGAAAG
Seq C2 exon
ACCTGCAGGCATGTGTGTTGAGTTCAGTAGAGCTGCAAGTGTTAACCGGCTCATGTTTTAAACTCAGAACTGTTCACAACATCCCCGTCACCAGCAACAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(25.2=100)
A:
PF0016924=PH=PD(14.5=88.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGGAGTCTTGTTTGCT
R:
ATCTTTGTTGCTGGTGACGGG
Band lengths:
174-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]