RnoEX0005581 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64603770-64604870:-
Coord C1 exon
chr10:64604748-64604870
Coord A exon
chr10:64604303-64604378
Coord C2 exon
chr10:64603770-64603874
Length
76 bp
Sequences
Splice sites
3' ss Seq
AAGTTTGCCTCTCCCTCCAGAGT
3' ss Score
8.32
5' ss Seq
AGGGTAAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
AAAGCCAACAAAGGACAGAGCCGAGCCATTGAGCGCCTCAAAAAGAAGATGTTTGAGAATGAGTTCTTACTGCTGCTCAATTCCCCAACGATCCCATTCCGGATACACAATCGGAATGGAAAG
Seq A exon
AGTTACCTGTTTCTTCTGTCTTCTGACTATGAGAGGTCGGAGTGGAGAGAAGCGATTCAGAAACTACAGAAGAAGG
Seq C2 exon
ATCTCCAGGCCTTTGTCCTGAGCTCTGTGGAGCTCCAGGTGCTCACGGGATCCTGTTTCAAGCTTAGGACTGTGCACAACATTCCTGTCACCAGCAATAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'33-23,'33-22,34-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(25.3=100)
A:
PF0016924=PH=PD(14.6=88.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAACAAAGGACAGAGCC
R:
GAAACAGGATCCCGTGAGCAC
Band lengths:
181-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]