Special

GgaEX6017454 @ galGal3

Exon Skipping

Description
NA
Coordinates
chr19:6272964-6273521:+
Coord C1 exon
chr19:6272964-6273093
Coord A exon
chr19:6273182-6273257
Coord C2 exon
chr19:6273409-6273521
Length
76 bp
Sequences
Splice sites
3' ss Seq
CATTGCTTTCTCTCTTCCAGAGC
3' ss Score
11.88
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
CCTGCAGAAAGCCAACAAAGGGCAGAGCCGTGCCATTGAGCGCCTCAAGAAGAAGATGTTTGAGAATGAGTTCTGGCTGCTCCTCAACTCACCCGCCATTCCCTTCCGCATCCACAACCGTAATGGAAAG
Seq A exon
AGCTATTTGTTCCTGCTGTCCTCTGACTACGAGAGGTCCGAATGGAGGGAGGCCATTCAGAAACTGCAGAAAAAAG
Seq C2 exon
ACCTCCAGGCCTTTGTGCTGAGCTCGGTGGAGCTGCAGGTGCTGACAGGGTCCTGCTTCAAGCTACGCACTGTCCACAACATCCCGGTCACCAGCAATAAGGATGGTGAGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

NA

No structure available
Features
Disorder rate (Iupred):
  C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0016924=PH=FE(26.9=100)
A:
PF0016924=PH=PD(14.4=88.5)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCTGGCTGCTCCTCAAC
R:
ATCCTTATTGCTGGTGACCGG
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]