BtaEX6085740 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22387905-22388997:+
Coord C1 exon
chr19:22387905-22388027
Coord A exon
chr19:22388364-22388439
Coord C2 exon
chr19:22388893-22388997
Length
76 bp
Sequences
Splice sites
3' ss Seq
TTGTCATCTCCTCTCTTCAGAGC
3' ss Score
10.21
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
AAAGCCAACAAAGGACAGAGCCGGGCCATCGAACGCCTGAAGAAGAAGATGTTTGAGAATGAGTTCTTACTGCTGCTCAATTCCCCCACAATCCCGTTTCGGATCCACAATCGGAATGGAAAG
Seq A exon
AGCTACCTGTTCCTACTGTCCTCAGACTATGAGAGGTCAGAGTGGAGAGAAGCGATTCAGAAACTGCAGAAGAAAG
Seq C2 exon
ATCTTCAGGCCTTTGTCCTGAGCTCGGTGGAGCTCCAGGTGCTCACAGGATCCTGTTTCAAACTTAGGACTGTACACAACATTCCTGTCACCAGCAATAAAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424-'39-18,'39-17,40-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(25.3=100)
A:
PF0016924=PH=PD(14.6=88.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAACAAAGGACAGAGCC
R:
GGATCCTGTGAGCACCTGGAG
Band lengths:
175-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]