Special

GgaEX6017454 @ galGal4

Exon Skipping

Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6329120-6329662:+
Coord C1 exon
chr19:6329120-6329242
Coord A exon
chr19:6329331-6329406
Coord C2 exon
chr19:6329558-6329662
Length
76 bp
Sequences
Splice sites
3' ss Seq
CATTGCTTTCTCTCTTCCAGAGC
3' ss Score
11.88
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AAAGCCAACAAAGGGCAGAGCCGTGCCATTGAGCGCCTCAAGAAGAAGATGTTTGAGAATGAGTTCTGGCTGCTCCTCAACTCACCCGCCATTCCCTTCCGCATCCACAACCGTAATGGAAAG
Seq A exon
AGCTATTTGTTCCTGCTGTCCTCTGACTACGAGAGGTCCGAATGGAGGGAGGCCATTCAGAAACTGCAGAAAAAAG
Seq C2 exon
ACCTCCAGGCCTTTGTGCTGAGCTCGGTGGAGCTGCAGGTGCTGACAGGGTCCTGCTTCAAGCTACGCACTGTCCACAACATCCCGGTCACCAGCAATAAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'18-17,'18-15,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.073 A=0.000 C2=0.028
Domain overlap (PFAM):

C1:
PF0016924=PH=FE(25.3=100)
A:
PF0016924=PH=PD(14.6=88.5)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTCTGGCTGCTCCTCAAC
R:
ATCCTTATTGCTGGTGACCGG
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]