DreEX0000100 @ danRer10
Exon Skipping
Gene
ENSDARG00000095180 | ABR (2 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61950340-61953293:+
Coord C1 exon
chr5:61950340-61950479
Coord A exon
chr5:61952975-61953109
Coord C2 exon
chr5:61953188-61953293
Length
135 bp
Sequences
Splice sites
3' ss Seq
TATTTCCCCTTTTCTCTCAGATA
3' ss Score
9.74
5' ss Seq
TTTGTATGA
5' ss Score
-2.01
Exon sequences
Seq C1 exon
ACGCGAGCGCTCCAAGGTGCCTTATATTGTGCGGCAGTGCATAGAGGAGGTGGAGAAGAGAGGGATTGATGAAGTGGGCATTTACAGGATCTCTGGAGTGGCCACAGACATCCAGGCCCTCAAAGCTGCGTTTGACGCCA
Seq A exon
ATACCAAAGATATCCTGATGATGTTGAGTGATATGGACATTAATGCCATAGCAGGGACGCTGAAACTGTATTTCAGGGAACTGCCAGAACCTCTTCTCACGGATCGGCTGTACCCGGCCTTCATGGAGGGCATTT
Seq C2 exon
CTTTATCAGATCCTGCAGCAAAAGAAAACTGCATGATGCATCTGCTGCGCTCGCTGCCAGACCCAAACCTCATCACATTCCTCACCCTGCTGGAACACCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095180-'4-4,'4-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.0=83.3)
A:
PF0062022=RhoGAP=FE(29.2=100)
C2:
PF0062022=RhoGAP=FE(22.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCTCCAAGGTGCCTTAT
R:
CTCTTGAGGTGTTCCAGCAGG
Band lengths:
242-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]