BtaEX6085735 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008424 | ABR
Description
Bos taurus active BCR-related gene (ABR), mRNA. [Source:RefSeq mRNA;Acc:NM_001046204]
Coordinates
chr19:22423565-22426118:+
Coord C1 exon
chr19:22423565-22423704
Coord A exon
chr19:22424840-22424974
Coord C2 exon
chr19:22426013-22426118
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCGCCGCCCCCACAGATA
3' ss Score
9.91
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GCGGGAGCGCTCCAAGGTGCCCTACATCGTGCGGCAGTGTGTGGAGGAGGTGGAGAAGCGGGGCATCGAGGAAGTTGGCATCTACCGGATATCAGGGGTGGCCACAGACATCCAGGCGCTGAAGGCCGTCTTTGATGCCA
Seq A exon
ATAACAAGGACATCCTGCTGATGCTGAGCGACATGGACATCAATGCCATTGCCGGCACCCTCAAGCTCTACTTCCGGGAGCTGCCCGAGCCCCTCCTCACAGACCGACTGTATCCCGCCTTCATGGAGGGCATCG
Seq C2 exon
CCCTGTCAGATCCTGCTGCCAAGGAGAACTGCATGATGCATCTGCTCCGCTCCCTGCCCGACCCCAACCTCATCACCTTCCTATTCCTGCTGGAACACTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008424-'51-42,'51-41,53-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
PF0062022=RhoGAP=FE(29.4=100)
C2:
PF0062022=RhoGAP=FE(22.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGGTGCCCTACATCGT
R:
CTTTTCAAGTGTTCCAGCAGGA
Band lengths:
237-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]