GgaEX1010752 @ galGal3
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
NA
Coordinates
chr15:8838442-8840805:-
Coord C1 exon
chr15:8840666-8840805
Coord A exon
chr15:8839155-8839289
Coord C2 exon
chr15:8838442-8838547
Length
135 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCTTCCCTCTTTCAGATA
3' ss Score
14.06
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
GAGGGAGAGATCAAAGGTGCCTTACATAGTGCGCCAGTGTGTGGAGGAGATAGAACGCCGTGGAATGGAGGAGGTGGGCATCTACCGCGTCTCTGGGGTCGCAACCGATATCCAGGCTTTGAAAGCGGCCTTTGATGTCA
Seq A exon
ATAACAAAGATGTGTCAGTGATGATGAGCGAGATGGATGTTAATGCTATTGCGGGCACATTGAAGCTCTACTTCCGAGAGCTGCCTGAACCTCTCTTTACAGATGAACTGTACCCCAACTTTGCAGAGGGCATTG
Seq C2 exon
CACTTTCAGATCCCGTTGCAAAGGAAAGCTGTATGTTGAATCTGTTGTTATCACTTCCAGAACCCAACCTTGTCACATTCCTTTTCCTTCTGGACCATCTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'23-29,'23-28,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.0=83.3)
A:
PF0062022=RhoGAP=FE(29.2=100)
C2:
PF0062022=RhoGAP=FE(22.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGAGATCAAAGGTGCC
R:
TCCAGAAGGAAAAGGAATGTGACA
Band lengths:
234-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]