MmuEX6049005 @ mm10
Exon Skipping
Gene
ENSMUSG00000009681 | Bcr
Description
breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
Coordinates
chr10:75177884-75181240:+
Coord C1 exon
chr10:75177884-75178023
Coord A exon
chr10:75180124-75180258
Coord C2 exon
chr10:75181135-75181240
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTTTCTGCGTTCTCTGCAGATA
3' ss Score
12.15
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GAGAGAGAGGTCCAAGGTACCTTACATTGTGCGCCAGTGTGTGGAAGAGATCGAGCGCCGGGGTATGGAGGAGGTGGGCATCTACCGAGTGTCTGGAGTGGCCACAGACATCCAGGCACTGAAGGCAGCCTTTGATGTCA
Seq A exon
ATAACAAGGATGTGTCCGTGATGATGAGCGAGATGGACGTGAACGCCATTGCCGGCACGCTGAAGCTCTACTTCCGTGAGCTGCCCGAGCCCCTCTTCACGGATGAGTTCTACCCTAACTTCGCAGAAGGCATTG
Seq C2 exon
CTCTTTCAGACCCCGTCGCAAAGGAGAGCTGCATGCTGAACCTGCTGCTGTCCCTCCCAGAAGCCAACCTGCTCACCTTCCTCTTCCTCCTGGACCACCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009681-'49-51,'49-45,55-51=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
PF0062022=RhoGAP=FE(29.4=100)
C2:
PF0062022=RhoGAP=PD(23.9=93.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGAGGTCCAAGGTACCT
R:
TTTTCAGGTGGTCCAGGAGGA
Band lengths:
245-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types