RnoEX0014493 @ rn6
Exon Skipping
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14422624-14426263:-
Coord C1 exon
chr20:14426124-14426263
Coord A exon
chr20:14423629-14423763
Coord C2 exon
chr20:14422624-14422729
Length
135 bp
Sequences
Splice sites
3' ss Seq
CATTTCTGCGTTCTTTCCAGATA
3' ss Score
10.42
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
Exon sequences
Seq C1 exon
GAGAGAGAGGTCCAAGGTACCTTACATTGTACGCCAGTGTGTGGAGGAGATTGAGCGCCGGGGCATGGAGGAAGTAGGCATCTACCGAGTGTCCGGAGTGGCCACGGACATCCAGGCCCTGAAGGCAGCCTTTGATGTCA
Seq A exon
ATAACAAGGACGTGTCCGTGATGATGAGCGAGATGGACGTGAACGCCATTGCTGGCACGTTGAAGCTCTACTTCCGAGAGCTGCCCGAGCCCCTCTTCACGGATGAGTTCTACCCTAACTTCGCAGAAGGCATTG
Seq C2 exon
CTCTTTCAGACCCCGTCGCAAAGGAAAGCTGCATGCTCAACCTGCTGCTGTCCCTCCCAGAAGCCAACCTCCTGACCTTCCTCTTCCTTCTGGACCACTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304-'30-27,'30-26,31-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
PF0062022=RhoGAP=FE(29.4=100)
C2:
PF0062022=RhoGAP=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGAGAGGTCCAAGGTACCT
R:
CTTTTCAAGTGGTCCAGAAGGA
Band lengths:
246-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]