RnoEX0005587 @ rn6
Exon Skipping
Gene
ENSRNOG00000056837 | Abr
Description
ABR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1306279]
Coordinates
chr10:64570645-64572532:-
Coord C1 exon
chr10:64572393-64572532
Coord A exon
chr10:64571470-64571604
Coord C2 exon
chr10:64570645-64570750
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCTTGCCCCCTCCTGTACAGATA
3' ss Score
9.02
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
GCGGGAGCGCTCCAAGGTGCCCTACATAGTCCGGCAGTGCATAGAAGAGGTGGAGAAGAGGGGCATCGAGGAGGTTGGCATCTACAGGATATCAGGGGTGGCCACGGACATCCAGGCCCTGAAGGCTGTCTTTGATGCCA
Seq A exon
ATAACAAGGATATCCTACTGATGCTGAGTGACATGGACATCAACGCTATTGCTGGTACCCTCAAGCTCTACTTTCGGGAGCTGCCTGAGCCCCTCCTTACAGACCGACTCTACCCAGCCTTCATGGAGGGCATTG
Seq C2 exon
CCCTGTCAGATCCTGCTGCCAAGGAGAACTGCATGATGCACCTACTCCGTTCCCTGCCCGACCCCAACCTCATCACCTTCCTTTTCCTGCTGGAACACTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056837-'50-45,'50-43,52-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
PF0062022=RhoGAP=FE(29.4=100)
C2:
PF0062022=RhoGAP=FE(22.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCAAGGTGCCCTACATAG
R:
CTTTTCAAGTGTTCCAGCAGGA
Band lengths:
238-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]