GgaEX1005761 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6336870-6337902:+
Coord C1 exon
chr19:6336870-6337009
Coord A exon
chr19:6337556-6337690
Coord C2 exon
chr19:6337797-6337902
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTGCTCTCTGGCCAGATA
3' ss Score
7.86
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GCGTGAGCGCTCCAAGGTGCCTTACATTGTGCGCCAGTGCATCGAGGAGGTGGAGAAGAGAGGCATTGAGGAGGTCGGCATCTACAGGATCTCTGGCGTCGCCACAGACATCCAGGCATTGAAGGCTGTCTTTGATGCGA
Seq A exon
ATAACAAGGACATCCTGGTGATGCTGAGTGACATGGACATCAACGCCATCGCCGGCACGCTCAAGCTGTATTTCCGGGAGCTGCCTGAGCCCCTCCTCACTGACAGACTGTACCCTGCCTTTATGGAGGGCATCG
Seq C2 exon
CCCTCTCGGATCCTGCTGCCAAGGAGAACTGCATGATGCACCTTCTCCGCTCACTGCCCGACCCCAACCTCATCACTTTCCTCTTCCTGCTGGAGCACTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
PF0062022=RhoGAP=FE(29.4=100)
C2:
PF0062022=RhoGAP=FE(22.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGCGCTCCAAGGTG
R:
GCTCCAGCAGGAAGAGGAAAG
Band lengths:
235-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]