DreEX0002703 @ danRer10
Exon Skipping
Gene
ENSDARG00000078541 | CERS3 (2 of 2)
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr7:9682074-9688887:+
Coord C1 exon
chr7:9682074-9682192
Coord A exon
chr7:9687744-9687801
Coord C2 exon
chr7:9688837-9688887
Length
58 bp
Sequences
Splice sites
3' ss Seq
CATCGGCTTTTCTCTTATAGTTG
3' ss Score
9.56
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCAGATATTGATGGCCTGTGTAAAAAATGCGGCTGGTCGAGTAGACAAGTGGAGCGCTGGTTCAGGAGGAGACGAAACCAGGACCGGCCCGGGGTTCTCAAAAAATTCAGAGAGGCCAG
Seq A exon
TTGGCGAATGATCTTTTATCTGTTGGCATTCATTGGAGGAATCATAGCTTTGTATGAT
Seq C2 exon
AAACCCTGGTTTTACAATGTGCCTGAAGTGTGGAGTGACTATCCGAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078541_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(50.9=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGCGGCTGGTCGAGTAG
R:
GTCACTCCACACTTCAGGCAC
Band lengths:
135-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]