MmuEX6011429 @ mm9
Exon Skipping
Gene
ENSMUSG00000030510 | Lass3
Description
LAG1 homolog, ceramide synthase 3 [Source:MGI Symbol;Acc:MGI:2681008]
Coordinates
chr7:73924437-73928338:+
Coord C1 exon
chr7:73924437-73924555
Coord A exon
chr7:73926680-73926737
Coord C2 exon
chr7:73928288-73928338
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTTTTCCTTTCTTTTGGCAGCTG
3' ss Score
10.5
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
ACTGATATTTATGGACTGGCAAAGAAGTGTAACTTGACAGAGCGCCAGGTTGAAAGATGGCTTAGGATTCGGCAGAAGCAAAACAAGCCTTGCAGGCTGCAGAAATTCCAGGAGTCTTG
Seq A exon
CTGGCGATTTACATTTTACTTGCTGATAACCATGGCTGGAGCTGTATTTCTGTATGAC
Seq C2 exon
AAACCATGGGCATATGACCTCTGGGAGGTTTGGAATGACTATCCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030510-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(45.2=70.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAACTTGACAGAGCGCCA
R:
AGTCATTCCAAACCTCCCAGAG
Band lengths:
133-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: