HsaEX6076687 @ hg38
Exon Skipping
Gene
ENSG00000154227 | CERS3
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr15:100400395-100484668:-
Coord C1 exon
chr15:100484550-100484668
Coord A exon
chr15:100479989-100480046
Coord C2 exon
chr15:100400395-100402865
Length
58 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCTTTCTTTTGGCAGCTG
3' ss Score
9.51
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACTGATATTTATGGACTGGCAAAGAAGTGTAACTTGACGGAGCGCCAGGTGGAAAGATGGTTTAGGAGTCGGCGGAATCAAGAGAGGCCTTCCAGGCTGAAGAAATTCCAGGAAGCTTG
Seq A exon
CTGGAGATTTGCATTTTACTTAATGATCACTGTTGCTGGAATTGCGTTTCTTTATGAT
Seq C2 exon
AGCATCCAGGATGTGAGGAGTGATGACGAGGATTATGAAGAGGAAGAGGAAGAGGAAGAAGAAGAGGCTACCAAAGGCAAAGAGATGGATTGTTTAAAGAACGGCCTCAGGGCTGAGAGGCACCTCATTCCCAATGGCCAGCATGGCCATTAGCTGGAAGCCTACAGGACTCCCATGGCACAGCATGCTGCAAGTACTGTTGGCAGCCTGGCTTCCAGGCCCCACACCGACCCCACATTCTGCCCTTCCCTCTTTCTCACCACCGCCTTCCCTCCCACCTAAGATGTGTTTACCAAAATGTTGTTAACTTGTGTTAAAATGTTAAATATAAGCATGCCCATGGATTTTTACTGCAGTTAGGACTCAGACTGGTCAAAGATTTCAAAGATTTCTCCACAGAACCGTCTCAGTTCTAATTGCACTCCCTCATGCATGTCACTTTCTCAGGGGCTCGCTTTGTTATAGACCCTTTCGCCTCGCCACCTTGCCTGTCCTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154227_MULTIEX1-8/13=7-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.360
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(51.8=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(23.2=100)
C2:
NO
Main Skipping Isoform:
ENST00000394113fB12181
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAATCAAGAGAGGCCTTC
R:
TCTCTTTGCCTTTGGTAGCCT
Band lengths:
133-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains