GgaEX1014924 @ galGal3
Exon Skipping
Gene
ENSGALG00000014624 | F1N8P2_CHICK
Description
NA
Coordinates
chr10:19419845-19424666:-
Coord C1 exon
chr10:19424548-19424666
Coord A exon
chr10:19420767-19420824
Coord C2 exon
chr10:19419845-19419895
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTTTAATCTTGCAGCTG
3' ss Score
10.72
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TCAGAGATTCAAGGCCTTGCCAAAAAGTGCAACTGCACGGTCCATCTGGTGGAAAAGTGGTTTAGGAGACGACGAAACCTTGAGATCCCAACGGTGCTTCGGAAATTCCAGGAAGCTTT
Seq A exon
CTGGAGATTTTCATTCTATTTCACATCCTCCATTGCTGGATTTATATTTCTGCATGAT
Seq C2 exon
AAGCCTTGGTTTTATGATATATGGCAGACGTGGGTTGGCTATCCATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014624-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(49.1=67.5),PF0379811=TRAM_LAG1_CLN8=PU(4.3=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(16.2=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGCCAAAAAGTGCAACT
R:
CCAACCCACGTCTGCCATATA
Band lengths:
144-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]