DreEX6064195 @ danRer10
Exon Skipping
Gene
ENSDARG00000036337 | cers3b
Description
ceramide synthase 3b [Source:ZFIN;Acc:ZDB-GENE-080220-32]
Coordinates
chr18:7357893-7360377:+
Coord C1 exon
chr18:7357893-7358011
Coord A exon
chr18:7358100-7358157
Coord C2 exon
chr18:7360327-7360377
Length
58 bp
Sequences
Splice sites
3' ss Seq
GTCATATTTCCTTTCTGTAGCTG
3' ss Score
8.47
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCGGATGTAAAAGGTGTGTGTAAAAAGCTGGGCTGGTCAGAAAGGCAGGTGGAGCGTTGGTTCCGCCAGAGGAGGAATCAAGACAGACCCGGAGTACAGAAGAAATTCAAAGAAGCCAG
Seq A exon
CTGGCGGTTTGCCTTTTATCTGTGCTCGACTTTTGGAGGAGTACTGGCTCTATATGAT
Seq C2 exon
AAACCATGGTTTTATGATCTACGTGAAGTGTGGGCGAAATTTCCCAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036337-'4-7,'4-6,5-7=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF101834=ESSS=FE(37.9=100),PF0004624=Homeobox=PD(54.7=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF101834=ESSS=FE(18.4=100),PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
C2:
PF101834=ESSS=PD(11.7=70.6),PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGGGCTGGTCAGAAAG
R:
CGCCCACACTTCACGTAGATC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]