GgaEX1014924 @ galGal4
Exon Skipping
Gene
ENSGALG00000014624 | CERS3
Description
ceramide synthase 3 [Source:HGNC Symbol;Acc:HGNC:23752]
Coordinates
chr10:16799306-16805488:-
Coord C1 exon
chr10:16805370-16805488
Coord A exon
chr10:16801589-16801646
Coord C2 exon
chr10:16799306-16799398
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTTCATTTTAATCTTGCAGCTG
3' ss Score
10.72
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
TCAGAGATTCAAGGCCTTGCCAAAAAGTGCAACTGCACGGTCCATCTGGTGGAAAAGTGGTTTAGGAGACGACGAAACCTTGAGATCCCAACGGTGCTTCGGAAATTCCAGGAAGCTTT
Seq A exon
CTGGAGATTTTCATTCTATTTCACATCCTCCATTGCTGGATTTATATTTCTGCATGAT
Seq C2 exon
ACTTTGCTGCCATCTCAGTATTGGTACTACATGGCTGAGATTAGTTTCTACTGGTCTCTCTTATTTACACTTGGGATCGATACCAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014624_MULTIEX1-4/10=3-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(49.1=67.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(11.4=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGCCAAAAAGTGCAACT
R:
GTACCAATACTGAGATGGCAGCA
Band lengths:
133-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]